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    Home > Recipes > Vegan Baking

    Pumpkin Muffins (Vegan & Whole Wheat)

    Updated: Jun 19, 2026 | Published: Jun 19, 2026 | by Amanda | Leave a Comment

    Perfect for lunchboxes, these pumpkin muffins are made with whole wheat flour to add fibre and protein and olive oil which helps keep them moist for longer. These vegan muffins are a staple in our house and come together in around 30-minutes. Main ingredients: cooked pumpkin, whole wheat flour, raw sugar, olive oil, cinnamon, nutmeg, all-spice.
    Serves: 12
    Prep time: 10 minutes minutes
    Cook time: 25 minutes minutes
    Total time: 35 minutes minutes
    Jump to Recipe
    Whole wheat pumpkin muffins on a tray.

    Even made with whole wheat flour these pumpkin muffins are light, warmly spiced, and deliciously moist. They keep fresh for days thanks to the use of olive oil making them the perfect lunch box filler. With a bullet-proof recipe I've been using for school lunches for years, these vegan muffins are wholesome, simple and ready in around 30-minutes.

    Wholemeal pumpkin muffins on wooden board.
    Jump to:
    • Why Are These Pumpkin Muffins Different to Other Recipes?
    • Ingredients & Substitutions
    • How to Make Pumpkin Muffins (Step-by-Step Guide)
    • How To Store Pumpkin Muffins
    • FAQs
    • More Plant-based Baking
    • Make This Recipe
    • Leave a Comment

    Why Are These Pumpkin Muffins Different to Other Recipes?

    This recipe uses whole flour, raw sugar, olive oil and fresh pumpkin (cooked) to create a more wholesome muffin recipe. Using whole wheat flour instead of plain flour doesn't work in every recipe, but it does in these muffins. Whole wheat flour adds protein and fibre to an otherwise basic muffin recipe - and, let's be honest, muffins are just cakes without the fancy head dress (my pumpkin cupcakes have all the trimmings). In pumpkin muffins, the whole flour adds a nutty depth of flavour that works with those warming pumpkin spices.

    • These pumpkin muffins are a decent source of protein and fibre.
    • The sugar in this recipe can be reduced by a quarter - which is a quarter cup - and the muffins will still come out perfectly. A little denser, but completely delicious.
    • This recipe uses cooked pumpkin, raw sugar and olive oil to round out the wholesome ingredients.
    • These vegan muffins will keep for around 5-days, making them perfect for meal prepping and lunch boxes.

    Ingredients & Substitutions

    Cooked pumpkin. While you can use canned pumpkin puree (see text box below) we don't have access to it in Australia, so this recipe is tailor-made for Aussie bakers. Besides, using whole ingredients is a bonus. I bake a big wedge of Kent pumpkin wrapped in foil (so it doesn't brown) at the start of each week and use it for these muffins, pumpkin overnight oats and a pumpkin smoothie. 

    Can you used canned pumpkin puree in this recipe? Yes. Replace the cooked pumpkin with 1 cup (250g) plain pumpkin purée. Be sure to use 100% pumpkin purée, not pumpkin pie filling, which contains added sugar and spices. No other changes to the recipe are needed.

    Whole wheat flour. Known as wholemeal flour here, it is available in most grocery stores. Nothing fancy here.

    Olive oil. I use olive oil but have used neutral flavoured oils too. It's up to your preference.

    Raw sugar. I use raw granulated sugar and caster sugar in all of my cooking. Brown sugar is a popular choice in pumpkin-inspired recipes but I don't think it adds enough in this recipe to add it. Brown sugar is white sugar with molasses added so if I can get away with using raw sugar, I do.

    Vanilla extract. Add another layer of warmth and depth.

    Pumpkin spices. The recipe using cinnamon, nutmeg and all-spice. If you have a pumpkin spice mix, you could use that too.

    How to Make Pumpkin Muffins (Step-by-Step Guide)

    You'll find full instructions and measurements in the recipe card at the bottom of the post.

    Steps 1 and 2.

    Combine your wet ingredients in a bowl (or blender jug) and blend with an immersion blender until smooth.

    Two images showing wet ingredients for pumpkin muffins before and after blending.

    Step 3.

    Whisk together the dry ingredients in a large mixing bowl (I am sorry -I didn't take a photo of this) and whisk together. Add the wet ingredients and stir to combine. Don't overwork your batter, just stir until all the flour incorporated into the batter.

    Two images showing pumpkin muffin batter in a bowl and in the baking pan.

    Step 4.

    Spoon the batter evenly between the lined muffin tray moulds and pop into a pre-heated oven (170

    Freshly baked whole wheat pumpkin muffins in a baking tray.
    A wholemeal pumpkin muffin with a bite taken out.

    How To Store Pumpkin Muffins

    On the counter: I cooler climates, you can wait for the muffins to cool and transfer them to the kitchen counter in an airtight container for up to 5-days.

    In the fridge: In warmer weather, cool muffins before transferring them to a sealed container to store in the fridge for up to 5-days.

    FAQs

    Are pumpkin muffins gluten-free?

    These pumpkin muffins are made with whole flour, so they are not gluten-free. Texanerin Baking has a gluten-free pumpkin muffin recipe although it contains eggs, so you make need to play around with substitutes.

    Are pumpkin muffins healthy?

    These pumpkin muffins are made with whole wheat flour, which adds more fibre and protein than white flour. They are also dairy-free, can be made with fresh pumpkin and can be made with less sugar if preferred. However, muffins are a treat food.

    Can I use other oils besides olive oil in muffins?

    You can use neutral flavoured oils in muffins and they will work the same way as olive oil.

    How do I know when my muffins are done?

    Your muffins are done when they have a lovely domed top and a skewer comes away mostly cleanly from the centre of the muffin.

    Can I freeze pumpkin muffins?

    Pumpkin muffins freeze beautifully. Allow the muffins to cool completely, then store them in an airtight container or freezer-safe bag and freeze for up to 3 months. Thaw at room temperature for 1–2 hours or warm in the microwave for 20–30 seconds before serving. Toppings such as seeds to nuts may soften slightly after freezing.

    Can I use canned pumpkin puree?

    Yes. Replace the cooked pumpkin with 1 cup (240g) plain pumpkin purée. Be sure to use 100% pumpkin purée, not pumpkin pie filling, which contains added sugar and spices. No other changes to the recipe are needed.

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    Sign up to my newsletter and follow along on Facebook, Pinterest and Insta for all the latest news. If you like this recipe, please check out my cookbook "Great Vegan Meals for the Carnivorous Family" It's full of simple, carnivore-approved family recipes.

    Make This Recipe

    Whole wheat pumpkin muffins on a tray.

    Pumpkin Muffins

    Perfect for lunchboxes, these pumpkin muffins are made with whole wheat flour to add fibre and protein and olive oil which helps keep them moist for longer. These vegan muffins are a staple in our house and come together in around 30-minutes. Main ingredients: cooked pumpkin, whole wheat flour, raw sugar, olive oil, cinnamon, nutmeg, all-spice.
    No ratings yet
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    Course: Baking
    Cuisine: Vegan
    Diet: Vegan
    Prep Time: 10 minutes minutes
    Cook Time: 25 minutes minutes
    Total Time: 35 minutes minutes
    Servings: 12
    Calories: 284kcal
    Author: Amanda Logan

    Equipment

    • 1 immersion blender or stand blender
    • 1 muffin tray twelve mould
    • muffin liners

    Ingredients 

    Dry ingredients

    • 375 g whole wheat flour 375g (wholemeal flour)
    • 2 teaspoon baking powder
    • ½ teaspoon salt
    • 2 teaspoon cinnamon
    • ½ teaspoon nutmeg
    • ½ teaspoon all-spice ground

    Wet ingredients

    • 1 cup cooked pumpkin pressed into cup (see Note 1)
    • 1 cup raw sugar 205g - can be reduced to ¾ cup (see Note 2)
    • ½ cup olive oil 125ml
    • 1½ teaspoon vanilla extract
    • 1¼ cup soy milk or oat milk

    Optional toppings

    • course sugar for crunch
    • pumpkin seeds

    Instructions

    • Preheat oven to 170℃ (338℉) and line a 12-mould muffin tray. (See Note 3)
    • Add the wet ingredients to a medium bowl and blend until smooth with an immersion blender. You can do this step in a stand blender also.
    • Whisk together the dry ingredients in a large mixing bowl before adding the blended wet ingredients.
    • Stir the two until the flour is incorporated. Tip: to make sure I don't over-mix my cakes and muffins, I use a silicon mixing spatula and mix from the bottom (where the flour likes to hide) in an upward motion. This grabs all the hiding flour without overworking the batter.
    • Once combined, spoon the batter into the lined baking moulds filling them almost to the top. Sprinkle with course sugar or pumpkin seeds (optional) and bake in the oven for 24-27 minutes, or until they are domed and a skewer comes away from the centre clean.
    • Remove from the oven and allow them to sit for 5-minutes before transferring to a cooling tray. Depending on the climate where you live, store in a sealed container on the kitchen counter or in the fridge for 5-days.
    Prevent your screen from going dark

    Notes

    Note 1. Living in Australia, we don't have access to canned pumpkin. I bake a wedge of pumpkin wrapped in foil (so it doesn't brown) at the start of each week and use it for these muffins, pumpkin overnight oats and a pumpkin smoothie. 
    Note 2. I have tested these muffins with a quarter less sugar and they were still delicious. They were a touch denser, but my family devoured them without complaint. If you are watching your sugar, you can go ahead and cut it down to three-quarters of a cup. 
    Note 3. I usually bake my muffins using silicon moulds. The cooking time with these moulds is a few minutes longer than when using paper liners. Only a touch longer but it is worth noting. 
    Qs. 
    Can I use canned pumpkin puree? Yes. Replace the cooked pumpkin with 1 cup (240g) plain pumpkin purée. Be sure to use 100% pumpkin purée, not pumpkin pie filling, which contains added sugar and spices. No other changes to the recipe are needed.

    Nutritional Disclaimer

    The nutritional information is an estimate only and is automatically calculated using online tools. For accurate results, we recommend calculating the nutritional information based on the ingredients and brands you use.

    Nutrition

    Calories: 284kcal | Carbohydrates: 44g | Protein: 5g | Fat: 11g | Saturated Fat: 2g | Polyunsaturated Fat: 2g | Monounsaturated Fat: 7g | Sodium: 115mg | Potassium: 273mg | Fiber: 4g | Sugar: 19g | Vitamin A: 3465IU | Vitamin C: 3mg | Calcium: 89mg | Iron: 2mg
    Tried It?I'd love to hear your feedback. Rate it & leave your feedback in the comments section below. Or you can tag @mygoodnesskitchen or hashtag #mygoodnesskitchen on Instagram.
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    My Goodness Kitchen is a Plant-based food blog for Busy cooks

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